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Algorithmic Thinking in Bioinformatics · End Term · Jan 2023 · FN

Algorithmic Thinking in Bioinformatics · End Term · Jan 2023 FN

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Question 128 MCQ · 7.0 marks

**[7 marks]** 21. Write a code to connect with Twitter’s streaming API. The stream should track tweets which mention the word “Global Warming”. On every hit dump the tweet object as a Json file and disconnect the stream when 1,000 tweets are collected.
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I have written answers on the answer sheets
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Not applicable       **Algo Thinking** **Section Id :** 64065338354 **Section Number :** 7 **Section type :** Online **Mandatory or Optional :** Mandatory **Number of Questions :** 16 **Number of Questions to be attempted :** 16 **Section Marks :** 50 **Display Number Panel :** Yes **Group All Questions :** No **Enable Mark as Answered Mark for Review and** Yes **Clear Response :** **Maximum Instruction Time :** 0

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Question 130 MSQ · 3.0 marks

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Question 131 MCQ · 4.0 marks

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Question 132 MCQ · 4.0 marks

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Question 133 MCQ · 4.0 marks

Many antibiotics interfere with the transfer of genetic information from X to Y, preventing bacteria from growing. Y is a polymer of Z. X has ribose sugar in its composition. Identify X, Y, and Z. Name the process that is affected by antibiotics here. X, Y, Z and the process are respectively:
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RNA, Protein, Amino acids, Translation
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DNA, Protein, Amino acids, Transcription
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RNA, Protein, Amino acids, Transcription
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RNA, Amino acids, Proteins, Translation

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Question 134 MCQ · 4.0 marks

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Question 135 MSQ · 2.0 marks

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Sensitivity to outliers
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Sensitivity to centroid initialization
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Non-convergence
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Some of the output clusters can be non-convex.

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Question 136 MSQ · 2.0 marks

Which of the following is/are example(s) of poor Hard clustering?
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Question 137 MCQ · 3.0 marks

Consider the following hypothetical phylogenetic tree constructed using viral sequences isolated from different host species.
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Which of the following is/are true (with absolute certainty) with respect to the immediate common ancestor of the Human and Monkey viruses?
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Human virus is the immediate common ancestor
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Monkey virus is the immediate common ancestor
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Goat virus is the immediate common ancestor
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Cannot tell

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Question 138 MCQ · 3.0 marks

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4

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Question 139 MCQ · 3.0 marks

Which of the following statements is/are true? 1. UPGMA method builds a rooted phylogenetic tree while the neighbor-joining tree method builds an unrooted phylogenetic tree. 2. UPGMA algorithm requires the distances to be ultrametric while the neighbor-joining tree algorithm requires the distances to be additive, if we need to prove that the respective algorithm can correctly recover the true tree. 3. The basic assumption of the UPGMA method is that all taxa evolve at a constant rate and that they are equally distant from the root.
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1 and 2
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2 and 3
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1 and 3
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1, 2 and 3

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Question 140 MCQ · 3.0 marks

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1 and 2
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2 and 3
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1 and 3
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1, 2 and 3

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Question 141 MCQ · 3.0 marks

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Question 142 MCQ · 2.0 marks

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Question 143 MCQ · 3.0 marks

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Based on the above data, answer the given subquestions.
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Question 144 MCQ · 3.0 marks

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Based on the above data, answer the given subquestions.
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Question 145 MSQ · 4.0 marks

Which of the following is/are true with respect to additive and ultrametric distance matrices and trees? Assume that the distance matrix satisfies the usual distance metric axioms like non- negativity, symmetricity and triangle inequality. Also, recall that an ultrametric distance matrix is any distance matrix that can be derived from some ultrametric tree (using the edge weights and paths in that tree).
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A 3 × 3 non-additive distance matrix is possible.
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A 4 × 4 non-additive distance matrix is possible.
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All ultrametric distance matrices are additive but not vice-versa.
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In an ultrametric tree, the distance from the root to any leaf is the same.       **BBN** **Section Id :** 64065338355 **Section Number :** 8 **Section type :** Online **Mandatory or Optional :** Mandatory **Number of Questions :** 1 **Number of Questions to be attempted :** 1 **Section Marks :** 100 **Display Number Panel :** Yes **Group All Questions :** No **Enable Mark as Answered Mark for Review and** Yes **Clear Response :** **Maximum Instruction Time :** 0

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